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Warning! Input file should be DNA sequences in fasta format. Not a raw dialign or clustalW output! Plain text, not a MSWord or any other format! Please see
documentation page
for an example.
general settings
motif width
number of motifs
number of windows
number of cycles
WM prior pseudocount
single strand mode
alignment level
not aligned
aligned (flexible)
aligned (strict)
input file
phylogeny settings
general phylogeny
background distribution settings
N-correlation
weight background probabilies
background file
external weight matrices
WM file
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